miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|71686473|gb|DR917110.1|DR917110 AGTACCCTAAACTCTCTTCTTCTCAAAAAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCCAA
AATCAAAACCCCTTTCTTAGATAACCAATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTCCC
CAAACACTCACATCACCATGTCTTCATCATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAACCA
ATTAAGGAATCCATTGTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACATATGCTGACACTGATGTTGT
TGTTGTTGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTATCG
AACAATCTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGTGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTCAC
ATCTTCCTTGATGAACTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACATC
CACAATCATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAAAG
AAGGTAAAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAAAT
GTAATGGAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAAGAG
CATTGGAAT




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9C521|UGAL1_ARATH UDP-galactose transporter 1 OS=Arabidopsis
           thaliana GN=UDP-GALT1 PE=2 SV=1
          Length = 336

 Score =  221 bits (564), Expect(2) = 6e-60
 Identities = 105/123 (85%), Positives = 115/123 (93%), Gaps = 1/123 (0%)
 Frame = +2

Query: 146 GSM-RAVLAILQWWGFNVTVIIINKWIFQKLDFKFPLTESCVHFICSSIGAYVAIHVLKA 322
           GSM R++LAILQWWGFNVTVII+NKWIFQKLDFKFPL+ SCVHFICSSIGAY+ I VLK 
Sbjct: 4   GSMFRSLLAILQWWGFNVTVIIMNKWIFQKLDFKFPLSVSCVHFICSSIGAYIVIKVLKL 63

Query: 323 KPLIQVEPEDRWKRIFPMSFVFCMNIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLDW 502
           KPLI V+PEDRW+RIFPMSFVFC+NIVLGNVSLRYIPVSFMQTIKSFTPATTV+LQWL W
Sbjct: 64  KPLIVVDPEDRWRRIFPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVW 123

Query: 503 SKH 511
            K+
Sbjct: 124 RKY 126



 Score = 30.0 bits (66), Expect(2) = 6e-60
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 513 FEWRIWASLVPI 548
           F+WRIWASLVPI
Sbjct: 127 FDWRIWASLVPI 138


>sp|Q9SFE9|GONS5_ARATH GDP-mannose transporter GONST5 OS=Arabidopsis
           thaliana GN=GONST5 PE=2 SV=1
          Length = 341

 Score =  216 bits (551), Expect(2) = 2e-58
 Identities = 99/119 (83%), Positives = 111/119 (93%)
 Frame = +2

Query: 155 RAVLAILQWWGFNVTVIIINKWIFQKLDFKFPLTESCVHFICSSIGAYVAIHVLKAKPLI 334
           R++L+ILQWWGFNVTVII+NKWIFQKLDFKFPL+ SCVHFICSSIGAY+ I VLK KPLI
Sbjct: 14  RSLLSILQWWGFNVTVIIMNKWIFQKLDFKFPLSVSCVHFICSSIGAYIVIKVLKLKPLI 73

Query: 335 QVEPEDRWKRIFPMSFVFCMNIVLGNVSLRYIPVSFMQTIKSFTPATTVILQWLDWSKH 511
            V+PEDRW+RIFPMSFVFC+NIVLGN+SLRYIPVSFMQTIKS TPATTV+LQWL W K+
Sbjct: 74  VVDPEDRWRRIFPMSFVFCINIVLGNISLRYIPVSFMQTIKSLTPATTVVLQWLVWRKY 132



 Score = 30.0 bits (66), Expect(2) = 2e-58
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 513 FEWRIWASLVPI 548
           F+WRIWASLVPI
Sbjct: 133 FDWRIWASLVPI 144


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  362 bits (930), Expect = 1e-99
 Identities = 194/259 (74%), Positives = 204/259 (78%), Gaps = 2/259 (0%)
 Frame = +1

Query: 37  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 213
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 214 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 390
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 391 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 570
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 571 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 750
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 751 CGHDGPFGATGVKRLKSIG 807
           CGHDGPFGATGVKRLKSIG
Sbjct: 238 CGHDGPFGATGVKRLKSIG 256